Been a few days since my last post, but have the alt installed and the bike back together, pics to follow. Lowered the fan closer to the rad to get as much clearance as possible, had to remove one of the fan support brackets to clear the alt belt, and trimmed the fan blade edges to miss the crank pulley. Tried the fan on the outside of the rad, but too close to the front fender and would hit.
Good results so far, charging well, quiet operation. Have a three wire set up. Only issue is the bike runs hotter now. Checked to make sure the thermostat was oriented properly - has a hole in it that's supposed to be oriented to the top. Have had discussions with another fellow who did the alt mod on an '86 SEI and he has the same issue. I have put in a switch to operate the fan manually that does help - can have fan operating continuously if needs be. Will be having the rad cleaned as well, and possibly renewing the thermostat.
Comments/suggestions?
Cheers