I'll second Dan's note on checking the harness anyway... Motorcycles are exposed to some wonderful conditions, and it doesn't take much moisture at all to turn connections, and even wire, into a green, resistive mess. I don't think any of it would kill your TCI, but it'd certainly cause stuff to not work well. Rather than installing replacement connectors, I just eliminate the connector altogether... cut back, strip, solder, and tape them tight, perhaps with some liquid goo to help the seal.
Stranded wire is wonderful at demonstrating capillary action... I had co-workers who didn't believe it, so I took a 500ft roll of #10 stranded from one of their trucks, put it on a table, and dropped the end of the wire in a peanut-butter jar full of water. The next morning, the water was gone. They thought it was a prank. I had 'em start cutting a foot of wire off the end of the spool... and keep cutting 'till they found dry wire.
They ended up throwing the spool away after about 40 minutes of cutting... they'd gone from cutting off a foot, to two, to five, to 20... and had a garbage can of cut-offs to prove it. Same thing happens in cars and motorcycles.
Wire is, from a capillary-action standpoint... like plumbing... and plumbing is the root of all evil.